seqbias

Estimation of per-position bias in high-throughput sequencing data

Bioconductor version: Release (2.12)

This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.

Author: Daniel Jones <dcjones at cs.washington.edu>

Maintainer: Daniel Jones <dcjones at cs.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("seqbias")

To cite this package in a publication, start R and enter:

    citation("seqbias")

Documentation

Details

Package Downloads