r3Cseq

Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Bioconductor version: Release (2.12)

This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.

Author: Supat Thongjuea, Bergen Center for Computational Science, Norway <supat.thongjuea at bccs.uib.no>

Maintainer: Supat Thongjuea <supat.thongjuea at bccs.uib.no>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("r3Cseq")

To cite this package in a publication, start R and enter:

    citation("r3Cseq")

biocViews	HighThroughputSequencing, Preprocessing, Sequencing, Software
Version	1.6.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-3
Depends	GenomicRanges, Rsamtools, data.table, rtracklayer, VGAM, qvalue, RColorBrewer, sqldf, methods
Imports
Suggests	BSgenome.Mmusculus.UCSC.mm9, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19
System Requirements
URL	http://r3cseq.genereg.net
Depends On Me
Imports Me
Suggests Me

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!