motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Bioconductor version: Release (2.12)

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

Author: Jianhong Ou, Michael Brodsky, Scot Wolfe and Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("motifStack")

To cite this package in a publication, start R and enter:

    citation("motifStack")

Documentation

PDF	R Script	motifStack Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	GenomicsSequence, SequenceMatching, Software, Visualization
Version	1.4.0
In Bioconductor since	BioC 2.11 (R-2.16)
License	GPL (>= 2)
Depends	R (>= 2.15.1), methods, grImport, grid, MotIV, ade4
Imports	grImport, grid, XML, ade4
Suggests	RUnit, BiocGenerics, MotifDb, RColorBrewer
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	motifStack_1.4.0.tar.gz
Windows Binary	motifStack_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	motifStack_1.4.0.tgz
Package Downloads Report	Download Stats

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