htSeqTools

Quality Control, Visualization and Processing for High-Throughput Sequencing data

Bioconductor version: Release (2.12)

We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.

Author: Evarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar Flores, David Rossell

Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("htSeqTools")

To cite this package in a publication, start R and enter:

    citation("htSeqTools")

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