exomeCopy

Copy number variant detection from exome sequencing read depth

Bioconductor version: Release (2.12)

Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("exomeCopy")

To cite this package in a publication, start R and enter:

    citation("exomeCopy")

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