ensemblVEP

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: Release (2.12)

Query the Ensembl Variant Effect Predictor via the perl API

Author: Valerie Obenchain <vobencha at fhcrc.org>,

Maintainer: Valerie Obenchain <vobencha at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ensemblVEP")

To cite this package in a publication, start R and enter:

    citation("ensemblVEP")

biocViews	Annotation, Bioinformatics, Software
Version	1.0.5
In Bioconductor since	BioC 2.13 (R-2.18)
License	Artistic-2.0
Depends	methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports	Biostrings, IRanges
Suggests	RUnit, BiocGenerics
System Requirements	Ensembl VEP (API version 73) and the Perl package DBD::mysql must be installed. See the package README and Ensembl web site, http://www.ensembl.org/info/docs/variation/vep/index.html for installation instructions.
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