chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: Release (2.12)

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chipseq")

To cite this package in a publication, start R and enter:

    citation("chipseq")

PDF	R Script	A Sample ChIP-Seq analysis workflow
PDF		Reference Manual

biocViews	ChIPseq, Software
Version	1.10.1
In Bioconductor since	BioC 2.5 (R-2.10)
License	Artistic-2.0
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.4), GenomicRanges(>= 1.7.7), BSgenome, ShortRead
Imports	methods, BiocGenerics, IRanges, BSgenome, GenomicRanges, lattice, ShortRead, stats
Suggests	GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements
URL
Depends On Me	PING
Imports Me	HTSeqGenie
Suggests Me	ggbio, oneChannelGUI

Common Bioconductor workflows include:

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