chimera

A package for secondary analysis of fusion products

Bioconductor version: Release (2.12)

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap

Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero

Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chimera")

To cite this package in a publication, start R and enter:

    citation("chimera")

Documentation

PDF	R Script	chimera
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.2.6
In Bioconductor since	BioC 2.13 (R-2.18)
License	Artistic-2.0
Depends	Biobase, GenomicRanges, Rsamtools, methods, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene
Imports
Suggests	BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements	TopHat, bowtie and samtools are required for some functionalities
URL
Depends On Me	oneChannelGUI
Imports Me
Suggests Me

Package Downloads

Package Source	chimera_1.2.6.tar.gz
Windows Binary	chimera_1.2.6.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	chimera_1.2.6.tgz
Package Downloads Report	Download Stats

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