bumphunter

Bump Hunter

Bioconductor version: Release (2.12)

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry, Martin Aryee, Hector Corrada Bravo, Kasper D. Hansen, Harris A. Jaffee

Maintainer: Rafael A. Irizarry <rafa at jhu.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("bumphunter")

To cite this package in a publication, start R and enter:

    citation("bumphunter")

PDF	R Script	The bumphunter user's guide
PDF		Reference Manual

biocViews	DNAMethylation, Epigenetics, Infrastructure, MultipleComparisons, Software
Version	1.0.2
In Bioconductor since	BioC 2.13 (R-2.18)
License	Artistic-2.0
Depends	R (>= 2.10), IRanges, GenomicRanges, foreach, iterators, methods, parallel
Imports	matrixStats, limma, itertools, doRNG
Suggests	limma, RUnit, BiocGenerics, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!