TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets.

Bioconductor version: Release (2.12)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TransView")

To cite this package in a publication, start R and enter:

    citation("TransView")

PDF	R Script	An introduction to TransView
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics, ChIPseq, Clustering, DNAMethylation, DataImport, GeneExpression, HighThroughputSequencing, Methylseq, Microarray, MultipleComparisons, RNAseq, Sequencing, Software, Transcription, Visualization
Version	1.4.5
In Bioconductor since	BioC 2.11 (R-2.16)
License	GPL-3
Depends	methods, GenomicRanges
Imports	Rsamtools, zlibbioc, gplots, IRanges
Suggests	RUnit, pasillaBamSubset
System Requirements
URL	http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me

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