SeqArray

Big Data Management of Genome-wide Sequencing Variants

Bioconductor version: Release (2.12)

Big data management of genome-wide variants using the CoreArray library, where genotypic data and annotations are stored in an array-oriented manner, offering efficient access of genetic variants using the R language.

Author: Xiuwen Zheng

Maintainer: Xiuwen Zheng <zhengx at u.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SeqArray")

To cite this package in a publication, start R and enter:

    citation("SeqArray")

Documentation

PDF	R Script	SeqArray: an R/Bioconductor Package for Big Data Management of Genome-Wide Sequencing Variants
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-2.18)
License	GPL-3
Depends	gdsfmt (>= 0.9.12)
Imports
Suggests	parallel, snow
System Requirements
URL	http://corearray.sourceforge.net/tutorials/SeqArray/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	SeqArray_1.0.0.tar.gz
Windows Binary	SeqArray_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	SeqArray_1.0.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center