SANTA
Spatial Analysis of Network Associations
Bioconductor version: Release (2.12)
This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network. Vertices can also be individually ranked by their strength of association with high-weight vertices.
Author: Alex Cornish and Florian Markowetz
Maintainer: Alex Cornish <a.cornish12 at imperial.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SANTA")
To cite this package in a publication, start R and enter:
citation("SANTA")
Documentation
| R Script | Using SANTA | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Clustering, NetworkAnalysis, NetworkEnrichment, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 2.13 (R-2.18) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14), igraph, snow |
| Imports | msm |
| Suggests | RUnit, BiocGenerics, org.Sc.sgd.db |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | SANTA_1.0.0.tar.gz |
| Windows Binary | SANTA_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | SANTA_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: webmaster@bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2013
