RedeR
Interactive visualization and manipulation of nested networks.
Bioconductor version: Release (2.12)
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations. It implements a callback engine by using a low-level R-to-Java interface to build and run common plugins. In this sense, RedeR takes advantage of R to run robust statistics, while the R-to-Java interface bridges the gap between network analysis and visualization.
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RedeR")
To cite this package in a publication, start R and enter:
citation("RedeR")
Documentation
| fig1.pdf | ||
| fig2.pdf | ||
| fig3.pdf | ||
| fig4.pdf | ||
| fig5a.pdf | ||
| fig5b.pdf | ||
| fig5c.pdf | ||
| fig6.pdf | ||
| R Script | Main vignette: RedeR Overview | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GraphsAndNetworks, NetworkVisualization, Networks, Software, Visualization |
| Version | 1.8.3 |
| In Bioconductor since | BioC 2.9 (R-2.14) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15), methods, igraph |
| Imports | RCurl, XML, XMLRPC, rJava |
| Suggests | JavaGD, PANR, pvclust |
| System Requirements | |
| URL | http://genomebiology.com/2012/13/4/R29 |
| Depends On Me | |
| Imports Me | Mulder2012 |
| Suggests Me | PANR |
Package Downloads
| Package Source | RedeR_1.8.3.tar.gz |
| Windows Binary | RedeR_1.8.3.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | RedeR_1.8.3.tgz |
| Package Downloads Report | Download Stats |
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