RSVSim
RSVSim: an R/Bioconductor package for the simulation of structural variations
Bioconductor version: Release (2.12)
RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <christoph.bartenhagen at uni-muenster.de>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")
To cite this package in a publication, start R and enter:
citation("RSVSim")
Documentation
| R Script | RSVSim: an R/Bioconductor package for the simulation of structural variations | |
| Reference Manual |
Details
| biocViews | Bioinformatics, HighThroughputSequencing, HighThroughputSequencingData, Software |
| Version | 1.0.2 |
| In Bioconductor since | BioC 2.13 (R-2.18) |
| License | LGPL-3 |
| Depends | R (>= 3.0.0), Biostrings, GenomicRanges |
| Imports | methods, IRanges, ShortRead |
| Suggests | BSgenome.Hsapiens.UCSC.hg19, MASS, rtracklayer |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | RSVSim_1.0.2.tar.gz |
| Windows Binary | RSVSim_1.0.2.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | RSVSim_1.0.2.tgz |
| Package Downloads Report | Download Stats |
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