MinimumDistance

A package for de novo CNV detection in case-parent trios

Bioconductor version: Release (2.12)

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert B Scharpf <rscharpf at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MinimumDistance")

To cite this package in a publication, start R and enter:

    citation("MinimumDistance")

PDF	R Script	Detection of de novo copy number alterations in case-parent trios
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics, CopyNumberVariants, Microarray, SNP, Software
Version	1.4.0
In Bioconductor since	BioC 2.10 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.14), BiocGenerics(>= 0.3.2), IRanges(>= 1.13.30)
Imports	methods, DNAcopy, utils, msm, lattice, BiocGenerics, VanillaICE(>= 1.21.24), ff, Biobase(>= 2.17.8), foreach, oligoClasses(>= 1.21.12), GenomicRanges, matrixStats
Suggests	human610quadv1bCrlmm(>= 1.0.3), SNPchip, RUnit
System Requirements
URL
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