MiRaGE
MiRNA Ranking by Gene Expression
Bioconductor version: Release (2.12)
The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.
Author: Y-h. Taguchi <tag at granular.com>
Maintainer: Y-h. Taguchi <tag at granular.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("MiRaGE")
To cite this package in a publication, start R and enter:
citation("MiRaGE")
Documentation
| R Script | How to use MiRaGE Package | |
| Reference Manual |
Details
| biocViews | GeneExpression, HighThroughputSequencingData, Microarray, RNAseq, RNAseqData, SAGE, Sequencing, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 2.11 (R-2.16) |
| License | GPL |
| Depends | R (>= 2.12.1), Biobase(>= 2.16.0) |
| Imports | AnnotationDbi, BiocGenerics |
| Suggests | seqinr (>= 3.0.3), biomaRt(>= 2.6.0), GenomicFeatures(>= 1.8.1), Biostrings(>= 2.24.1), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | MiRaGE_1.2.0.tar.gz |
| Windows Binary | MiRaGE_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | MiRaGE_1.2.0.tgz |
| Package Downloads Report | Download Stats |
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