MethylSeekR

Segmentation of Bis-seq data

Bioconductor version: Release (2.12)

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MethylSeekR")

To cite this package in a publication, start R and enter:

    citation("MethylSeekR")

PDF	R Script	MethylSeekR
PDF		Reference Manual

biocViews	DNAMethylation, HighThroughputSequencing, Methylseq, Software
Version	1.0.1
In Bioconductor since	BioC 2.13 (R-2.18)
License	GPL (>=2)
Depends	rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports	IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
Suggests	BSgenome.Hsapiens.UCSC.hg18
System Requirements
URL
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