GGtools

software and data for analyses in genetics of gene expression

Bioconductor version: Release (2.12)

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GGtools")

To cite this package in a publication, start R and enter:

    citation("GGtools")

PDF	R Script	GGtools 2012: efficient tools for eQTL discovery
PDF		Reference Manual
Text		README
Text		NEWS

biocViews	GeneExpression, GeneticVariability, Genetics, SNP, Software
Version	4.8.0
In Bioconductor since	BioC 1.9 (R-1.14)
License	Artistic-2.0
Depends	R (>= 2.14), stats4, GGBase(>= 3.19.7), IRanges, GenomicRanges, Rsamtools
Imports	methods, utils, stats, BiocGenerics, snpStats, ff, AnnotationDbi, Biobase, bit, VariantAnnotation
Suggests	GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
URL
Depends On Me	ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me	ceuhm3
Suggests Me	hmyriB36, ind1KG

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