DiffBind

Differential Binding Analysis of ChIP-Seq peak data

Bioconductor version: Release (2.12)

Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

Author: Rory Stark <rory.stark at cruk.cam.ac.uk>, Gordon Brown <gordon.brown at cruk.cam.ac.uk>

Maintainer: Rory Stark <rory.stark at cruk.cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DiffBind")

To cite this package in a publication, start R and enter:

    citation("DiffBind")

Documentation

PDF	R Script	DiffBind User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ChIPseq, HighThroughputSequencing, Software
Version	1.6.2
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	R (>= 2.14.0), GenomicRanges
Imports	RColorBrewer, amap, edgeR(>= 2.3.58), gplots, DESeq, grDevices, stats, utils, IRanges, zlibbioc
Suggests	DESeq, Rsamtools
System Requirements
URL
Depends On Me	MMDiff
Imports Me
Suggests Me

Package Downloads

Package Source	DiffBind_1.6.2.tar.gz
Windows Binary	DiffBind_1.6.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DiffBind_1.6.2.tgz
Package Downloads Report	Download Stats

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