CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: Release (2.12)

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Mark van de Wiel, Sjoerd Vosse

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CGHcall")

To cite this package in a publication, start R and enter:

    citation("CGHcall")

Documentation

PDF	R Script	CGHcall
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software, Visualization
Version	2.20.0
In Bioconductor since	BioC 2.1 (R-2.6)
License	GPL (http://www.gnu.org/copyleft/gpl.html)
Depends	R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall
Imports
Suggests
System Requirements
URL
Depends On Me	CGHnormaliter
Imports Me	CGHnormaliter
Suggests Me

Package Downloads

Package Source	CGHcall_2.20.0.tar.gz
Windows Binary	CGHcall_2.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CGHcall_2.20.0.tgz
Package Downloads Report	Download Stats

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