BiSeq
Processing and analyzing bisulfite sequencing data
Bioconductor version: Release (2.12)
The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples.
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katja.hebestreit at uni-muenster.de>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("BiSeq")
To cite this package in a publication, start R and enter:
citation("BiSeq")
Documentation
| R Script | An Introduction to BiSeq | |
| Reference Manual |
Details
| biocViews | DNAMethylation, Genetics, HighThroughputSequencing, Methylseq, Sequencing, Software |
| Version | 1.0.3 |
| In Bioconductor since | BioC 2.13 (R-2.18) |
| License | LGPL-3 |
| Depends | R (>= 2.15.2), methods, IRanges(>= 1.17.24), GenomicRanges, Formula |
| Imports | methods, BiocGenerics, Biobase, IRanges, GenomicRanges, rtracklayer, parallel, betareg, lokern, Formula |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | BiSeq_1.0.3.tar.gz |
| Windows Binary | BiSeq_1.0.3.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | BiSeq_1.0.3.tgz |
| Package Downloads Report | Download Stats |
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