Surrogate Variable Analysis


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Documentation for package ‘sva’ version 3.6.0

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ComBat Adjust for batch effects using empirical Bayes framework.
f.pvalue Quickly calculate F-test p-values
fsva Single sample surrogate variable correction for prediciton problems.
irwsva.build Build surrogate variables with an iterative algorithm from gene expression and model data
num.sv Estimate number of surrogate variables to include in analysis
sva Estimate surrogate variables with an iterative algorithm from gene expression and model data
twostepsva.build Build surrogate variables from gene expression and model data