cnvGSA-package | Gene-Set Analysis of (Rare) Copy Number Variants |
burdenGs | Class '"CnvGSAOutput"' |
burdenGs-method | Class '"CnvGSAOutput"' |
burdenSample | Class '"CnvGSAOutput"' |
burdenSample-method | Class '"CnvGSAOutput"' |
cnvData | Class '"CnvGSAInput"' |
cnvData-method | Class '"CnvGSAInput"' |
cnvData-method | Class '"CnvGSAOutput"' |
cnvData<- | Class '"CnvGSAInput"' |
cnvData<--method | Class '"CnvGSAInput"' |
cnvGSA | Gene-Set Analysis of (Rare) Copy Number Variants |
cnvGSAexportBurdenStats | Export burden statistics |
cnvGSAFisher | CNV/gene-set association using Fisher Exact Test |
CnvGSAInput | Class '"CnvGSAInput"' |
CnvGSAInput-class | Class '"CnvGSAInput"' |
CnvGSAOutput | Class '"CnvGSAOutput"' |
CnvGSAOutput-class | Class '"CnvGSAOutput"' |
enrRes | Class '"CnvGSAOutput"' |
enrRes-method | Class '"CnvGSAOutput"' |
geneData | Class '"CnvGSAInput"' |
geneData-method | Class '"CnvGSAInput"' |
geneData-method | Class '"CnvGSAOutput"' |
geneData<- | Class '"CnvGSAInput"' |
geneData<--method | Class '"CnvGSAInput"' |
getCnvGenes | Determine genes hit by CNVs |
gsData | Class '"CnvGSAInput"' |
gsData-method | Class '"CnvGSAInput"' |
gsData<- | Class '"CnvGSAInput"' |
gsData<--method | Class '"CnvGSAInput"' |
params | Class '"CnvGSAInput"' |
params-method | Class '"CnvGSAInput"' |
params<- | Class '"CnvGSAInput"' |
params<--method | Class '"CnvGSAInput"' |
readGMT | Read gene-sets from a .gmt file |
readGVF | Read CNVs from a .gvf file |
readParamsRFile | Read cnvGSA parameters from a file (R format) |
summary-method | cnvGSA methods for function 'summary' |
summary-methods | cnvGSA methods for function 'summary' |