clusterProfiler-package |
statistical analysis and visulization of functional profiles for genes and gene clusters The package implements methods to analyze and visualize functional profiles of gene and gene clusters. |
buildGOmap |
buildGOmap |
clusterProfiler |
statistical analysis and visulization of functional profiles for genes and gene clusters The package implements methods to analyze and visualize functional profiles of gene and gene clusters. |
compareCluster |
Compare gene clusters functional profile Given a list of gene set, this function will compute profiles of each gene cluster. |
compareClusterResult-class |
Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis. |
DataSet |
Datasets gcSample contains a sample of gene clusters. |
enrichGO |
GO Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment GO categories with FDR control. |
enrichKEGG |
KEGG Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG categories with FDR control. |
gcSample |
Datasets gcSample contains a sample of gene clusters. |
getGOLevel |
get GOIDs at a specific level |
Gff2GeneTable |
Gff2GeneTable |
groupGO |
Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at specific level. |
groupGOResult-class |
Class "groupGOResult" This class represents the result of functional Profiles of a set of gene at specific GO level. |
plot |
plot method |
plot-method |
Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis. |
plot-method |
plot method |
plotting.clusterProfile |
plotting-clusterProfile |
show |
show method |
show-method |
Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis. |
show-method |
Class "groupGOResult" This class represents the result of functional Profiles of a set of gene at specific GO level. |
summary |
summary method |
summary-method |
Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis. |