buildNetwork |
construct the regulatory network |
ce.IDsMap |
map file for converting gene name or sequence name of _Caenorhabditis elegans_ to wormbase identifier |
ce.interactionmap |
transcript regulatory map of _Caenorhabditis elegans_ |
ce.mapIDs |
map file for converting from wormbase identifier to _Caenorhabditis elegans_ gene name |
ce.miRNA.map |
micro RNA of _Caenorhabditis elegans_ |
convertID |
convert gene IDs by id map |
example.data |
example datasets for documentation |
filterNetwork |
filter the regulatory network table by expression profile |
hs.IDsMap |
map file for converting gene name or sequence name of _Homo sapiens_ to Entrez identifier |
hs.interactionmap |
transcript regulation map of _Homo sapiens_ |
hs.mapIDs |
map file for converting from Entrez identifier to _Homo sapiens_ gene name |
hs.miRNA.map |
micro RNA of _Homo sapiens_ |
polishNetwork |
generate an object of grahpNEL to represent the regulation network |
uniqueExprsData |
unique the microarray data |