rnaSeqMap

rnaSeq secondary analyses

Bioconductor version: Release (2.11)

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("rnaSeqMap")

To cite this package in a publication, start R and enter:

    citation("rnaSeqMap")

PDF	R Script	rnaSeqMap primer
PDF		Reference Manual

biocViews	Annotation, Bioinformatics, DifferentialExpression, GeneExpression, HighThroughputSequencing, RNAseq, ReportWriting, SAGE, Software, Transcription, Visualization
Version	2.12.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	GPL-2
Depends	R (>= 2.11.0), methods, xmapcore, Biobase, Rsamtools
Imports	GenomicRanges, IRanges, edgeR, DESeq, DBI, RMySQL (>= 0.6-0)
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