TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets.

Bioconductor version: Release (2.11)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TransView")

To cite this package in a publication, start R and enter:

    citation("TransView")

PDF	R Script	An introduction to TransView
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics,DNAMethylation,GeneExpression,Transcription, Methylseq,DataImport,Visualization,Clustering,MultipleComparisons, Microarray,Sequencing,HighThroughputSequencing,ChIPseq,RNAseq, Software
Version	1.0.7
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL-3
Depends	methods,GenomicRanges
Imports	Rsamtools,zlibbioc,gplots,IRanges
Suggests	RUnit,pasillaBamSubset
System Requirements
URL	http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me

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