Rsubread

Rsubread: a super fast, sensitive and accurate read aligner for mapping next-generation sequencing reads

Bioconductor version: Release (2.11)

This package performs read mapping, exon junction detection and other tasks for next-generation sequencing data. The read mapping function implements a novel mapping paradigm based on seed-and-vote. It can be used to map both short reads and long reads (>200bp) and reads of variable lengths. It also provides functions to summarize read counts to genes or exons and gives detection p values for each gene in the RNA-seq data.

Author: Wei Shi, Yang Liao, Jenny Zhiyin Dai and Timothy Triche, Jr.

Maintainer: Wei Shi <shi at wehi.edu.au>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Rsubread")

To cite this package in a publication, start R and enter:

    citation("Rsubread")

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