RedeR

Interactive visualization and manipulation of nested networks.

Bioconductor version: Release (2.11)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations. It implements a callback engine by using a low-level R-to-Java interface to build and run common plugins. In this sense, RedeR takes advantage of R to run robust statistics, while the R-to-Java interface bridges the gap between network analysis and visualization.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RedeR")

To cite this package in a publication, start R and enter:

    citation("RedeR")

Documentation

PDF		fig1.pdf
PDF		fig2.pdf
PDF		fig3.pdf
PDF		fig4.pdf
PDF		fig5a.pdf
PDF		fig5b.pdf
PDF		fig5c.pdf
PDF		fig6.pdf
PDF	R Script	Main vignette: RedeR Overview
PDF		Reference Manual
Text		NEWS

Details

biocViews	GraphsAndNetworks, NetworkVisualization, Networks, Software, Visualization
Version	1.6.1
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL (>= 2)
Depends	R (>= 2.15), methods, igraph, RCurl, XML
Imports	rJava, XMLRPC
Suggests	PANR, pvclust
System Requirements
URL	http://www.markowetzlab.org/software/networks.html
Depends On Me
Imports Me	Mulder2012
Suggests Me	PANR