Bioconductor version: Release (2.11)
The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.
Author: Edward Morrissey
Maintainer: Edward Morrissey <edward.morrissey at gmail.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GRENITS")
To cite this package in a publication, start R and enter:
citation("GRENITS")
| R Script | GRENITS | |
| Reference Manual | ||
| Text | NEWS |
| biocViews | GeneRegulation, GraphsAndNetworks, NetworkInference, Software, TimeCourse |
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) |
| License | GPL (>= 2) |
| Depends | R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0) |
| Imports | graphics, grDevices, reshape2, stats, utils |
| Suggests | network |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
| Package Source | GRENITS_1.10.0.tar.gz |
| Windows Binary | GRENITS_1.10.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) | GRENITS_1.10.0.tgz |
| Package Downloads Report | Download Stats |
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