DeconRNASeq

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Bioconductor version: Release (2.11)

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

Author: Ting Gong <tinggong at gmail.com> Joseph D. Szustakowski <joseph.szustakowski at novartis.com>

Maintainer: Ting Gong <tinggong at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DeconRNASeq")

To cite this package in a publication, start R and enter:

    citation("DeconRNASeq")

Documentation

Details

Package Downloads