Bioconductor version: Release (2.11)
This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.
Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve
Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CellNOptR")
To cite this package in a publication, start R and enter:
citation("CellNOptR")
| CellNOptR0_1flowchart.pdf | ||
| Fig2.pdf | ||
| Fig3.pdf | ||
| Fig4.pdf | ||
| Fig6.pdf | ||
| Fig7.pdf | ||
| R Script | Main vignette:Playing with networks using CellNOptR | |
| Reference Manual | ||
| Text | NEWS |
| biocViews | Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse |
| Version | 1.4.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) |
| License | GPL-2 |
| Depends | R (>= 2.15.0), RBGL, graph, methods |
| Imports | |
| Suggests | Rgraphviz,RUnit, BiocGenerics |
| System Requirements | Graphviz version >= 2.2 |
| URL | |
| Depends On Me | CNORdt, CNORfuzzy, CNORode |
| Imports Me | |
| Suggests Me |
| Package Source | CellNOptR_1.4.0.tar.gz |
| Windows Binary | CellNOptR_1.4.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) | CellNOptR_1.4.0.tgz |
| Package Downloads Report | Download Stats |
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