basePath | Class '"HTMLReport"' |
basePath-method | Class '"HTMLReport"' |
BaseReport-class | Class '"BaseReport"' |
baseUrl | Class '"HTMLReport"' |
baseUrl-method | Class '"HTMLReport"' |
CSVFile | Function for creating and initializing a CSVFile for publishing results |
CSVFile-class | Class '"CSVFile"' |
DataPackage | Function for creating and initializing an object of class DataPackage. |
DataPackage-class | Class '"DataPackage"' |
dependencies | Class '"DataPackage"' |
dependencies-method | Class '"DataPackage"' |
dependencies<- | Class '"DataPackage"' |
dependencies<--method | Class '"DataPackage"' |
filename | Methods for getting the name of a file for a CSVFile or HTMLReport. |
filename-method | Methods for getting the name of a file for a CSVFile or HTMLReport. |
filename-methods | Methods for getting the name of a file for a CSVFile or HTMLReport. |
finish | Finalizing reports after publishing results |
finish-method | Finalizing reports after publishing results |
finish-methods | Finalizing reports after publishing results |
HTMLReport | Creating and initializing an HTMLReport object |
HTMLReport-class | Class '"HTMLReport"' |
mockRnaSeqData | A counts table of mock RNA-deq data in mouse. |
name | Class '"BaseReport"' |
name-method | Class '"BaseReport"' |
name<--method | Class '"BaseReport"' |
name<--method | Class '"CSVFile"' |
name<--method | Class '"HTMLReport"' |
page | Class '"HTMLReport"' |
page-method | Class '"HTMLReport"' |
page<- | Class '"HTMLReport"' |
page<--method | Class '"HTMLReport"' |
path | Class '"BaseReport"' |
path-method | Class '"BaseReport"' |
path-method | Class '"DataPackage"' |
path-method | Class '"HTMLReport"' |
publish | Methods for publishing a variety of data types in selected output formats |
publish-method | Methods for publishing a variety of data types in selected output formats |
publish-methods | Methods for publishing a variety of data types in selected output formats |
reportDirectory | Class '"BaseReport"' |
reportDirectory-method | Class '"BaseReport"' |
reportDirectory<- | Class '"BaseReport"' |
reportDirectory<--method | Class '"BaseReport"' |
reporting.theme | Color theme for use in ReportingTools |
show-method | Class '"BaseReport"' |
show-method | Class '"HTMLReport"' |
title | Class '"BaseReport"' |
title-method | Class '"BaseReport"' |
title<- | Class '"BaseReport"' |
title<--method | Class '"BaseReport"' |
url-method | Class '"HTMLReport"' |
validConnection | Determine connection validity |