| bpExperimentNames | A Character Vector Containing the Names of the 13 Graph Objects Stored in this Data Package |
| Cagney2001BPGraph | A directed Graph for the Y2H Bait to Prey Interaction data detected by Cagney et al. 2001. |
| collectIntactPPIData | A function that parses the Intact repository for bait to prey affiliation |
| createBPList | A function to create the Bait to Prey association list. |
| Gavin2002BPGraph | A directed Graph for the AP-MS Bait to Prey Interaction data detected by Gavin et al. 2002. |
| Gavin2006BPGraph | A directed Graph for the AP-MS Bait to Prey Interaction data detected by Gavin et al. 2006. |
| Hazbun2003BPGraph | A directed Graph for the Y2H Bait to Prey Interaction data detected by Hazbun et al. 2003. |
| Ho2002BPGraph | A directed Graph for the AP-MS Bait to Prey Interaction data detected by Ho et al. 2002. |
| intAct2Sys | A function that maps the Intact ID's to the first org.Sc.sgd systematic name using the org.Sc.sgd package |
| intActPPIData | A data set documenting the output of collectIntactPPIData |
| Ito2001BPGraph | A directed Graph for the Y2H Bait to Prey Interaction data detected by Ito et al. 2001. |
| ItoCore2001BPGraph | A directed Graph for the Y2H Bait to Prey Interaction data detected by Ito et al. 2001. |
| ItoFull2001BPGraph | A directed Graph for the Y2H Bait to Prey Interaction data detected by Ito et al. 2001. |
| Krogan2004BPGraph | A directed Graph for the AP-MS Bait to Prey Interaction data detected by Krogan et al. 2004. |
| Krogan2006BPGraph | A directed Graph for the AP-MS Bait to Prey Interaction data detected by Krogan et al. 2006. |
| map2Systematic | A function that maps the Intact ID's to Yeast Systematic Names if possible |
| map2Systematic2 | A secondary function that maps the Intact ID's to Yeast Systematic Names if possible |
| ppipred | Protein-protein predictions |
| stochasticBaits | Lists of viable baits in each bait to prey dataset which are conjectured not to be systematically biased. |
| sWAC2Sys | A data set that contains the translation between Swiss accension codes to Gene Systematic Names |
| tableList | A list of tables for the downloaded and parsed xml files from the IntAct database |
| Tong2002BPGraph | A directed Graph for the Y2H Bait to Prey Interaction data detected by Tong et al. 2002. |
| twTableAPMS | A table to look at the permutation statistics of pairs of Y2H experiment. |
| twTableY2H | A table to look at the permutation statistics of pairs of Y2H experiment. |
| Uetz2000BPGraph1 | A directed Graph for the Y2H Bait to Prey Interaction data detected by Uetz et al. 2000. |
| Uetz2000BPGraph2 | A directed Graph for the Y2H Bait to Prey Interaction data detected by Uetz et al. 2000. |
| viableBaits | Lists of viable prey or baits in each bait to prey dataset |
| viablePrey | Lists of viable prey or baits in each bait to prey dataset |
| y2h | A data set documenting the bait to prey associations for the y2h empirical data-sets as found within the IntAct repository. |
| y2hSysGW | A data object documenting the bait to prey associations for the y2h empirical data-sets with two restrictions. |
| Zhao2005BPGraph | A directed Graph for the Y2H Bait to Prey Interaction data detected by Zhao et al. 2005. |