| allhex | utility function: get all hexamers in upstream sequence for an ORF |
| buildUpstreamSeqs2 | workflow component - build an upstreamSeqs instance from a FASTA read |
| chkAllUS | analyze relationship between motif frequency and binding intensity for selected motif and TF |
| chkMotif4TF | analyze relationship between motif frequency and binding intensity for selected motif and TF |
| getUpstream | Class "upstreamSeqs" |
| harbChIP | Experimental Data Package: harbChIP |
| keys | Class "upstreamSeqs" |
| keys-method | Class "upstreamSeqs" |
| Nmers | Class "upstreamSeqs" |
| Nmers-method | Class "upstreamSeqs" |
| organism | Class "upstreamSeqs" |
| organism-method | Class "upstreamSeqs" |
| sceUpstr | Biostrings representations of S. cerevisiae upstream regions |
| seqs | Class "upstreamSeqs" |
| seqs-method | Class "upstreamSeqs" |
| show-method | Class "upstreamSeqs" |
| upstreamSeqs-class | Class "upstreamSeqs" |