| cgdv17-package | Complete Genomics Diversity Panel, chr17 on 46 individuals |
| cgdv17 | Complete Genomics Diversity Panel, chr17 on 46 individuals |
| countVariants | count variants in a raggedVariantSet instance |
| CY17 | Complete Genomics Diversity Panel, chr17 on 46 individuals |
| getrd | acquire data for and construct a ragged variant set instance |
| getRVS | acquire data for and construct a ragged variant set instance |
| h1 | Complete Genomics Diversity Panel, chr17 on 46 individuals |
| padToReference | create a snpStats SnpMatrix instance by padding a ragged variant set to reference alleles wherever a variant is not recorded |
| popvec | Complete Genomics Diversity Panel, chr17 on 46 individuals |
| raggedVariantSet-class | Class '"raggedVariantSet"' |
| sampleNames-method | Class '"raggedVariantSet"' |
| show-method | Class '"raggedVariantSet"' |
| variantGRanges | acquire a list of GRanges recording variants and locations |
| variantGRanges-method | Class '"raggedVariantSet"' |
| variantNames | acquire a list of GRanges recording variants and locations |
| [-method | Class '"raggedVariantSet"' |