Complete Genomics Diversity Panel, chr17 on 46 individuals


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Documentation for package ‘cgdv17’ version 0.0.17

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cgdv17-package Complete Genomics Diversity Panel, chr17 on 46 individuals
cgdv17 Complete Genomics Diversity Panel, chr17 on 46 individuals
countVariants count variants in a raggedVariantSet instance
CY17 Complete Genomics Diversity Panel, chr17 on 46 individuals
getrd acquire data for and construct a ragged variant set instance
getRVS acquire data for and construct a ragged variant set instance
h1 Complete Genomics Diversity Panel, chr17 on 46 individuals
padToReference create a snpStats SnpMatrix instance by padding a ragged variant set to reference alleles wherever a variant is not recorded
popvec Complete Genomics Diversity Panel, chr17 on 46 individuals
raggedVariantSet-class Class '"raggedVariantSet"'
sampleNames-method Class '"raggedVariantSet"'
show-method Class '"raggedVariantSet"'
variantGRanges acquire a list of GRanges recording variants and locations
variantGRanges-method Class '"raggedVariantSet"'
variantNames acquire a list of GRanges recording variants and locations
[-method Class '"raggedVariantSet"'