| Arora2010 | Raw and processed data for the application of PANs to Ewing's sarcoma |
| Arora2010.BMfitting | Fitting a beta-mixture model to association scores |
| Arora2010.fig | A pipeline function to reproduce the main figures of network analyses in Wang et al 2012 for Arora S et al 2010 |
| Arora2010.hypergeo | Hypergeometric tests for pathway analysis |
| Arora2010.InferPAN | Infer a posterior association network given a fitted BetaMixture object |
| Arora2010.module.visualize | Infer a posterior association network given a fitted BetaMixture object |
| Arora2010.ModuleSearchByPvclust | Searching for enriched functional modules by pvclust |
| Arora2010.pathway | Raw and processed data for the application of PANs to Ewing's sarcoma |
| Arora2010.pipeline | A pipeline to do network analyses in Wang et al 2012 for Arora S et al 2010 |
| bm_Arora2010 | Raw and processed data for the application of PANs to Ewing's sarcoma |
| bm_ext_Mulder2012 | Raw and processed data for the application to epidermal stem cells |
| bm_Mulder2012 | Raw and processed data for the application to epidermal stem cells |
| dist.pvclust4PAN | Compute distances between gene phenotypes for pvclust |
| GSEARandomWalkFig | Plot a figure illustrating enrichment analysis results |
| Mulder2012 | Raw and processed data for the application to epidermal stem cells |
| Mulder2012.BMfitting | Fitting a beta-mixture model to association scores |
| Mulder2012.BMfitting.extended | Fitting a beta-mixture model to association scores |
| Mulder2012.fig | A pipeline function to reproduce the main figures of network analyses in Mulder K et al 2012 and Wang et al 2012 |
| Mulder2012.InferPAN | Infer a posterior association network given a fitted BetaMixture object |
| Mulder2012.module.visualize | Infer a posterior association network given a fitted BetaMixture object |
| Mulder2012.ModuleSearchByPvclust | Searching for enriched functional modules by pvclust |
| Mulder2012.PINdbProteins | Raw and processed data for the application to epidermal stem cells |
| Mulder2012.pipeline | A pipeline to do network analyses for Mulder 2012 |
| Mulder2012.PPI | Raw and processed data for the application to epidermal stem cells |
| Mulder2012.PPIEnrich | Raw and processed data for the application to epidermal stem cells |
| Mulder2012.PPIenrich | Enrichment analyses of posterior probabilities in protein-protein interactions |
| Mulder2012.PPIPre | Extracting protein-protein interactions from PINdb |
| Mulder2012.rawScreenAnnotation | Raw and processed data for the application to epidermal stem cells |
| Mulder2012.rawScreenData | Raw and processed data for the application to epidermal stem cells |
| Mulder2012.RNAiPre | Preprocessing of the raw RNAi screens |
| pan_Arora2010 | Raw and processed data for the application of PANs to Ewing's sarcoma |
| pan_ext_Mulder2012 | Raw and processed data for the application to epidermal stem cells |
| pan_Mulder2012 | Raw and processed data for the application to epidermal stem cells |
| parPvclust4PAN | Compute distances between gene phenotypes for pvclust |
| PINdbProteins | Raw and processed data for the application to epidermal stem cells |
| PPI | Raw and processed data for the application to epidermal stem cells |
| PPIEnrich_Mulder2012 | Raw and processed data for the application to epidermal stem cells |
| proteinModules | Raw and processed data for the application to epidermal stem cells |
| pw.rslt | Raw and processed data for the application of PANs to Ewing's sarcoma |
| rawScreenAnnotation | Raw and processed data for the application to epidermal stem cells |
| rawScreenData | Raw and processed data for the application to epidermal stem cells |