A package that contains the bait to prey directed graphs for protein-protein interactions.


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Documentation for package ‘ppiData’ version 0.1.17

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bpExperimentNames A Character Vector Containing the Names of the 13 Graph Objects Stored in this Data Package
Cagney2001BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by Cagney et al. 2001.
collectIntactPPIData A function that parses the Intact repository for bait to prey affiliation
createBPList A function to create the Bait to Prey association list.
Gavin2002BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected by Gavin et al. 2002.
Gavin2006BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected by Gavin et al. 2006.
Hazbun2003BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by Hazbun et al. 2003.
Ho2002BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected by Ho et al. 2002.
intAct2Sys A function that maps the Intact ID's to the first org.Sc.sgd systematic name using the org.Sc.sgd package
intActPPIData A data set documenting the output of collectIntactPPIData
Ito2001BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by Ito et al. 2001.
ItoCore2001BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by Ito et al. 2001.
ItoFull2001BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by Ito et al. 2001.
Krogan2004BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected by Krogan et al. 2004.
Krogan2006BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected by Krogan et al. 2006.
map2Systematic A function that maps the Intact ID's to Yeast Systematic Names if possible
map2Systematic2 A secondary function that maps the Intact ID's to Yeast Systematic Names if possible
ppipred Protein-protein predictions
stochasticBaits Lists of viable baits in each bait to prey dataset which are conjectured not to be systematically biased.
sWAC2Sys A data set that contains the translation between Swiss accension codes to Gene Systematic Names
tableList A list of tables for the downloaded and parsed xml files from the IntAct database
Tong2002BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by Tong et al. 2002.
twTableAPMS A table to look at the permutation statistics of pairs of Y2H experiment.
twTableY2H A table to look at the permutation statistics of pairs of Y2H experiment.
Uetz2000BPGraph1 A directed Graph for the Y2H Bait to Prey Interaction data detected by Uetz et al. 2000.
Uetz2000BPGraph2 A directed Graph for the Y2H Bait to Prey Interaction data detected by Uetz et al. 2000.
viableBaits Lists of viable prey or baits in each bait to prey dataset
viablePrey Lists of viable prey or baits in each bait to prey dataset
y2h A data set documenting the bait to prey associations for the y2h empirical data-sets as found within the IntAct repository.
y2hSysGW A data object documenting the bait to prey associations for the y2h empirical data-sets with two restrictions.
Zhao2005BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by Zhao et al. 2005.