spade
SPADE -- An analysis and visualization tool for Flow Cytometry
Bioconductor version: 2.10
SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.
Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornsen
Maintainer: Michael Linderman <michael.d.linderman at gmail.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("spade")
To cite this package in a publication, start R and enter:
citation("spade")
Documentation
| R Script | spade package | |
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | Clustering, FlowCytometry, GUI, GraphsAndNetworks, Software, Visualization |
| Depends | R (>= 2.11), igraph |
| Imports | Biobase, flowCore |
| Suggests | flowViz |
| System Requirements | |
| License | GPL-2 |
| URL | http://cytospade.org |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.2.0 |
Package Downloads
| Package Source | spade_1.2.0.tar.gz |
| Windows Binary | spade_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | spade_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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