phyloseq

Handling and analysis of high-throughput phylogenetic sequence data.

Bioconductor version: 2.10

phyloseq is a set of classes, and tools to facilitate the import, storage, analysis, and graphical display of phylogenetic sequencing data.

Author: Paul J. McMurdie <mcmurdie at stanford.edu>, Susan Holmes <susan at stat.stanford.edu>

Maintainer: Paul J. McMurdie <mcmurdie at stanford.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("phyloseq")

To cite this package in a publication, start R and enter:

    citation("phyloseq")

PDF	R Script	Analysis examples using phyloseq
PDF	R Script	Basic data manipulation using phyloseq
PDF	R Script	phyloseq_classes_4.pdf
PDF		Reference Manual
Text		NEWS

biocViews	Classification, Clustering, GeneticVariability, HighThroughputSequencing, MultipleComparisons, QualityControl, Software
Depends	R (>= 2.15.0), methods, ade4 (>= 1.4), ape (>= 2.8), ggplot2 (>= 0.9.2), picante (>= 1.3), reshape (>= 0.8.4)
Imports	foreach (>= 1.3), igraph0 (>= 0.5), multtest(>= 2.8), plyr (>= 1.7), RJSONIO (>= 0.98), vegan (>= 2.0)
Suggests	genefilter
System Requirements
License	AGPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.3
Since	Bioconductor 2.10 (R-2.15)

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