chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: 2.10

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chipseq")

To cite this package in a publication, start R and enter:

    citation("chipseq")

PDF	R Script	A Sample ChIP-Seq analysis workflow
PDF		Reference Manual

biocViews	ChIPseq, Software
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.4), GenomicRanges(>= 1.7.7), BSgenome, ShortRead
Imports	methods, BiocGenerics, IRanges, BSgenome, GenomicRanges, lattice, ShortRead, stats
Suggests	GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me	oneChannelGUI
Version	1.6.1
Since	Bioconductor 2.5 (R-2.10)

Common Bioconductor workflows include:

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