MinimumDistance

A package for de novo CNV detection in case-parent trios

Bioconductor version: 2.10

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf

Maintainer: Moiz Bootwalla <mbootwa1 at jhu.edu>, Robert B Scharpf <rscharpf at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MinimumDistance")

To cite this package in a publication, start R and enter:

    citation("MinimumDistance")

PDF	R Script	Detection of de novo copy number alterations in case-parent trios
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics, CopyNumberVariants, Microarray, SNP, Software
Depends	R (>= 2.14), IRanges(>= 1.13.30)
Imports	methods, DNAcopy, utils, msm, lattice, BiocGenerics, VanillaICE(>= 1.17.22), ff, SNPchip(>= 2.0.3), Biobase, foreach, oligoClasses(>= 1.17.38)
Suggests	human610quadv1bCrlmm, RUnit
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0
Since	Bioconductor 2.10 (R-2.15)

Common Bioconductor workflows include:

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