MSnbase

MSnbase: Base Functions and Classes for MS-based Proteomics

Bioconductor version: 2.10

Basic plotting, data manipulation and processing of MS-based Proteomics data

Author: Laurent Gatto <lg390 at cam.ac.uk> with contributions from Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MSnbase")

To cite this package in a publication, start R and enter:

    citation("MSnbase")

PDF	R Script	Base Functions and Classes for MS-based Proteomics
PDF	R Script	itraqchem.pdf
PDF	R Script	MSnbase development
PDF	R Script	MSnbase IO capabilities
PDF	R Script	plotMzDelta-pride12011.pdf
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics, Infrastructure, MassSpectrometry, Proteomics, Software
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.1.3), Biobase(>= 2.15.2), ggplot2, mzR
Imports	graphics, plyr, IRanges, preprocessCore, vsn, grid, reshape
Suggests	testthat, zoo, pgfSweave, Rdisop
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me	isobar
Version	1.4.1
Since	Bioconductor 2.8 (R-2.13)

Common Bioconductor workflows include:

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