# Statistical tools and data structures for plate-based flow cytometry

## Documentation for package ‘plateCore’ version 1.14.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

plateCore-package | plateCore: A Bioconductor package for high throughput analysis of flow cytometry data
%on% | Methods for Function %on% in Package 'plateCore'
%on%-method | Methods for Function %on% in Package 'plateCore'
%on%-methods | Methods for Function %on% in Package 'plateCore'
applyControlGates | Apply control gates to a flowPlate
applyControlGates-method | Apply control gates to a flowPlate
applyControlGates-methods | Apply control gates to a flowPlate
compensate | Compensate a flowPlate to correct for the effects of spillover.
compensate-method | Compensate a flowPlate to correct for the effects of spillover.
compensationSet | Sample Compensation Data Set
densityplot | One-dimensional density plots for flowPlates
densityplot-method | One-dimensional density plots for flowPlates
fixAutoFl | Correct for the effects of cell size (FSC) on autofluorescence
fixAutoFl-method | Correct for the effects of cell size (FSC) on autofluorescence
flowPlate | Create a flowPlate
flowPlate-class | The flowPlate class.
flowPlate-method | Create a flowPlate
fpbind | Merge multiple flowPlates into a single virtual flowPlate
fpbind-method | Merge multiple flowPlates into a single virtual flowPlate
getGroups | Retrieve Negative control groups from a flowPlate
getGroups-method | Retrieve Negative control groups from a flowPlate
gutterPlot | gutterPlot
gutterPlot-method | gutterPlot
mfiPlot | mfiPlot
mfiPlot-method | mfiPlot
panel.densityplot.flowPlate | Lattice-flowViz style panel function for flowPlate densityplot.
panel.xyplot.flowPlate | Lattice-flowViz style panel function for flowPlate xyplot.
pbmcPlate | pbmcPlate Data Set
phenoData-method | Create a flowPlate
plateCore | plateCore: A Bioconductor package for high throughput analysis of flow cytometry data
plateSet | Get the flowSet from a flowPlate object
plateSet-method | Get the flowSet from a flowPlate object
plotPlate | plotPlate
plotPlate-method | plotPlate
prepanel.densityplot.flowPlate | Lattice-flowViz style panel function for flowPlate densityplot.
prepanel.xyplot.flowPlate | Lattice-flowViz style panel function for flowPlate xyplot.
sampleNames-method | Create a flowPlate
setControlGates | Create control gates for a flowPlate
setControlGates-method | Create control gates for a flowPlate
Subset | Subset
Subset-method | Subset
summaryStats | Compute summary statistics on a flowPlate
summaryStats-method | Compute summary statistics on a flowPlate
wellAnnotation | Retrieve a data.frame describing the content of a flowPlate
wellAnnotation-method | Retrieve a data.frame describing the content of a flowPlate
xyplot | Scatter plots (dotplots) for flowPlates.
xyplot-method | Scatter plots (dotplots) for flowPlates.
[-method | The flowPlate class.
[[-method | The flowPlate class.