A B C D E F G H I L M N P R S V W Z misc
alias-method | Class "gt.object" for storing the result of the function gt |
alias<- | Class "gt.object" for storing the result of the function gt |
alias<--method | Class "gt.object" for storing the result of the function gt |
annotation.vandeVijver | Some selected annotations for the breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute, to serve as example data in the globaltest package. (Deprecated) |
bbase | Goodness of fit testing in regression models using Global Test |
btensor | Goodness of fit testing in regression models using Global Test |
checkerboard | Checkerboard plot for Global Test (Deprecated) |
coefficients-method | Multinomial Logistic Regression |
combine-method | Class "gt.result" for results of the function globaltest (Deprecated) |
comparative | Comparative proportions for the Global Test |
covariates | Global Test diagnostic plots |
diagnostics | Global Test diagnostic plots |
draw | Multiple testing correction for the Global Test |
extract | Class "gt.object" for storing the result of the function gt |
extract-method | Class "gt.object" for storing the result of the function gt |
features | Global Test diagnostic plots |
findFocus | Multiple testing correction for the Global Test |
fit | Class "gt.result" for results of the function globaltest (Deprecated) |
fit-method | Class "gt.result" for results of the function globaltest (Deprecated) |
fitted.values-method | Multinomial Logistic Regression |
focusLevel | Multiple testing correction for the Global Test |
geneplot | Gene Plot for Global Test (Deprecated) |
genesets | Class "gt.result" for results of the function globaltest (Deprecated) |
genesets-method | Class "GOstructure" (Deprecated) |
getFocus | Multiple testing on the GO graph (Deprecated) |
globaltest | Global Test (Deprecated) |
GOstructure | Class "GOstructure" (Deprecated) |
GOstructure-class | Class "GOstructure" (Deprecated) |
gt | Global Test (new implementation, 2009) |
gt.barplot | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
gt.barplot-class | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
gt.multtest | Correct globaltest results for multiple testing (Deprecated) |
gt.object | Class "gt.object" for storing the result of the function gt |
gt.object-class | Class "gt.object" for storing the result of the function gt |
gt.options | Options for globaltest package |
gt.result | Class "gt.result" for results of the function globaltest (Deprecated) |
gt.result-class | Class "gt.result" for results of the function globaltest (Deprecated) |
gtBroad | Gene set testing of gene set databases using Global Test |
gtConcept | Gene set testing of gene set databases using Global Test |
gtGO | Gene set testing of gene set databases using Global Test |
gtKEGG | Gene set testing of gene set databases using Global Test |
gtKS | Goodness of fit testing in regression models using Global Test |
gtLI | Goodness of fit testing in regression models using Global Test |
gtPS | Goodness of fit testing in regression models using Global Test |
hist-method | Class "gt.object" for storing the result of the function gt |
hist-method | Class "gt.result" for results of the function globaltest (Deprecated) |
inheritance | Multiple testing correction for the Global Test |
leafNodes | Multiple testing correction for the Global Test |
length-method | Class "gt.object" for storing the result of the function gt |
length-method | Class "GOstructure" (Deprecated) |
length-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
length-method | Class "gt.result" for results of the function globaltest (Deprecated) |
makeGOstructure | Multiple testing on the GO graph (Deprecated) |
mlogit | Multinomial Logistic Regression |
mlogit-class | Multinomial Logistic Regression |
model.matrix-method | Class "gt.object" for storing the result of the function gt |
names-method | Class "gt.object" for storing the result of the function gt |
names-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
names-method | Class "gt.result" for results of the function globaltest (Deprecated) |
names<--method | Class "gt.object" for storing the result of the function gt |
names<--method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
names<--method | Class "gt.result" for results of the function globaltest (Deprecated) |
p.adjust-method | Class "gt.object" for storing the result of the function gt |
p.value | Class "gt.object" for storing the result of the function gt |
p.value-method | Class "gt.object" for storing the result of the function gt |
p.value-method | Class "gt.result" for results of the function globaltest (Deprecated) |
permutations | Permutations version of the Global Test (Deprecated) |
plot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
regressionplot | Regression Plot for Global Test (Deprecated) |
reparamZ | Goodness of fit testing in regression models using Global Test |
residuals-method | Multinomial Logistic Regression |
result | Class "gt.object" for storing the result of the function gt |
result-method | Class "gt.object" for storing the result of the function gt |
result-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
result-method | Class "gt.result" for results of the function globaltest (Deprecated) |
reweighZ | Goodness of fit testing in regression models using Global Test |
sampleplot | Sample Plot for Global Test (Deprecated) |
sampling | Sampling random 'pathways' for the Global Test |
scale-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
show-method | Class "gt.object" for storing the result of the function gt |
show-method | Multinomial Logistic Regression |
show-method | Class "GOstructure" (Deprecated) |
show-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
show-method | Class "gt.result" for results of the function globaltest (Deprecated) |
size | Class "gt.object" for storing the result of the function gt |
size-method | Class "gt.object" for storing the result of the function gt |
size-method | Class "gt.result" for results of the function globaltest (Deprecated) |
sort-method | Class "gt.object" for storing the result of the function gt |
sort-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
sort-method | Class "gt.result" for results of the function globaltest (Deprecated) |
sterms | Goodness of fit testing in regression models using Global Test |
sterms-method | Class "gt.object" for storing the result of the function gt |
subjects | Global Test diagnostic plots |
subsets | Class "gt.object" for storing the result of the function gt |
subsets-method | Class "gt.object" for storing the result of the function gt |
summary-method | Class "gt.object" for storing the result of the function gt |
summary-method | Multinomial Logistic Regression |
vandeVijver | A subset of the Breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute. (Deprecated) |
weights-method | Class "gt.object" for storing the result of the function gt |
z.score | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
z.score-method | Class "gt.object" for storing the result of the function gt |
z.score-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
z.score-method | Class "gt.result" for results of the function globaltest (Deprecated) |
[-method | Class "gt.object" for storing the result of the function gt |
[-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
[-method | Class "gt.result" for results of the function globaltest (Deprecated) |
[[-method | Class "gt.object" for storing the result of the function gt |