align.plots | align plots on x axis |
Arith | Tracks for genomic graphics |
Arith-method | Tracks for genomic graphics |
autoplot | Generic autoplot function |
autoplot-method | Generic autoplot function |
backup | Tracks for genomic graphics |
backup-method | Tracks for genomic graphics |
fortify | Fortify a object to a data frame |
fortify-method | Fortify a object to a data frame |
geom_alignment | Alignment geoms for GRanges object |
geom_alignment-method | Alignment geoms for GRanges object |
geom_arch | Arch geoms for GRanges object |
geom_arch-method | Arch geoms for GRanges object |
geom_arrow | Arrow geoms for GRanges object |
geom_arrow-method | Arrow geoms for GRanges object |
geom_arrowrect | Arrowrect geoms for GRanges object |
geom_arrowrect-method | Arrowrect geoms for GRanges object |
geom_bar | Segment geoms for GRanges object |
geom_bar-method | Segment geoms for GRanges object |
geom_chevron | Chevron geoms for GRanges object |
geom_chevron-method | Chevron geoms for GRanges object |
geom_rect | Rect geoms for GRanges object |
geom_rect-method | Rect geoms for GRanges object |
geom_segment | Segment geoms for GRanges object |
geom_segment-method | Segment geoms for GRanges object |
layout_circle | Create a circle layout |
layout_circle-method | Create a circle layout |
layout_karyogram | Create a karyogram layout |
layout_karyogram-method | Create a karyogram layout |
plotFragLength | Plot estimated fragment length for paired-end RNA-seq data |
plotFragLength-method | Plot estimated fragment length for paired-end RNA-seq data |
plotGrandLinear | Manhattan for GWAS |
plotRangesLinkedToData | Plot Ranges Linked with Data |
plotSingleChrom | Plot single chromosome with cytoband |
plotSpliceSum | Plot Splice Summary from RNA-seq data |
plotSpliceSum-method | Plot Splice Summary from RNA-seq data |
plotStackedOverview | Plot stacked overview |
Tracks for genomic graphics | |
print-method | Tracks for genomic graphics |
rescale | rescale ggplot object |
rescale-method | rescale ggplot object |
reset | Tracks for genomic graphics |
reset-method | Tracks for genomic graphics |
show | Tracks for genomic graphics |
show-method | Tracks for genomic graphics |
stat_aggregate | Generates summaries on the specified windows |
stat_aggregate-method | Generates summaries on the specified windows |
stat_coverage | Calculate coverage |
stat_coverage-method | Calculate coverage |
stat_gene | Calculate gene structure |
stat_gene-method | Calculate gene structure |
stat_identity | Calculate coverage |
stat_identity-method | Calculate coverage |
stat_mismatch | Calculate mismatch summary |
stat_mismatch-method | Calculate mismatch summary |
stat_stepping | Calculate stepping levels |
stat_stepping-method | Calculate stepping levels |
stat_table | Tabulate a GRanges object |
stat_table-method | Tabulate a GRanges object |
summary | Tracks for genomic graphics |
summary-method | Tracks for genomic graphics |
theme_alignment | Theme for alignment |
theme_null | Blank theme |
tracks | Tracks for genomic graphics |
Tracks-class | Tracks for genomic graphics |
update | Tracks for genomic graphics |
update-method | Tracks for genomic graphics |
xlim | Tracks for genomic graphics |
xlim-method | Tracks for genomic graphics |
xlim<- | Tracks for genomic graphics |
xlim<--method | Tracks for genomic graphics |