buildTrainingSet | internal functions |
buildTrainingSet.signaltrans | internal functions |
classificationModel | Hierarchical Classification Model |
classificationModelSignalTrans | Hierarchical Classification Model for Signaling Transduction Pathways and Pathway Components |
classificationModelSignalTrans_dme | Hierarchical Classification Model for Signaling Transduction Pathways and Pathway Components |
classificationModel_dme | Hierarchical Classification Model |
classificationModel_hsa | Hierarchical Classification Model |
code_test | internal functions |
code_train | internal functions |
color.pathway.by.elements | KEGG pathway information |
gene2pathway | Pathway membership prediction |
gene2pathway.signaltrans | Pathway membership prediction |
get.element.relations.by.pathway | internal functions |
get.elements.by.pathway | KEGG pathway information |
getComponents | KEGG pathway information |
getInterProDomains | internal functions |
getKEGGHierarchy | internal functions |
internal | internal functions |
loss | internal functions |
modelKEGG | Hierarchical Classification Model |
modelSignalTrans | Hierarchical Classification Model for Signaling Transduction Pathways and Pathway Components |
predict.gene2pathway | internal functions |
retrain | Retrain classification model |
retrain.signaltrans | Retrain classification model for signaling pathways |
run.crossvalidation | Assessment of Prediction Performance via Cross-validation |
struct_predict | internal functions |
struct_train | internal functions |
svmlearn | internal functions |
svmpredict | internal functions |
test.overrepresentation | Test statistical overrepresentation of KEGG pathways in a list of genes |