$-method | BeadStudioSetList class |
$<--method | BeadStudioSetList class |
BeadStudioSet | Constructor for BeadStudioSet class |
BeadStudioSetList | Constructor for BeadStudioSetList class. |
BeadStudioSetList-class | BeadStudioSetList class |
centerAutosomesAt | Center estimates of copy number for autosomes. |
copyNumberLimits | Constraints for updating the means for the copy number states in the hidden markov model. |
emission | Methods for Viterbi objects |
emission-method | Methods for Viterbi objects |
hmm | Hidden Markov Model methods |
hmm-method | BeadStudioSetList class |
hmm-method | Hidden Markov Model methods |
hmm-methods | Hidden Markov Model methods |
hmmBeadStudioSet | HMM functions for oligoSnpSet and BeadStudioSet containers |
hmmOligoSnpSet | HMM functions for oligoSnpSet and BeadStudioSet containers |
hmmResults | Example output from hmm |
hmmSnpSet | Function for fitting a HMM to SnpSet containers |
icePlatforms | List platforms for which ICE option is supported. |
length-method | BeadStudioSetList class |
read.bsfiles | Read BeadStudio/GenomeStudio processed data. |
rescale | Rescale a numeric vector |
robustSds | Calculate robust estimates of the standard deviation |
rowMAD | Calculate the median absolute deviation for each row in a matrix. |
sd | Methods for estimating copy number standard deviations. |
sd-method | Methods for estimating copy number standard deviations. |
sd-methods | Methods for estimating copy number standard deviations. |
Viterbi-methods | Methods for Viterbi objects |
viterbi2Wrapper | Wrapper function for fitting the viterbi algorithm |
[-method | BeadStudioSetList class |
[[-method | BeadStudioSetList class |