Visualizations for copy number alterations


[Up] [Top]

Documentation for package ‘SNPchip’ version 2.2.0

Help Pages

arrangeSideBySide Helper function to arrange two trellis objects side by side on a grid.
centromere Coordinates of centromere
chromosomeAnnotation chromosome annotation
cytoband Start and stop sites of cytoband
plotIdiogram Plots idiogram for one chromosome
xypanel A panel function for plotting copy number versus physical position
xyplot Plot copy number and physical position for a set of genomic intervals.
xyplot-method Plot copy number and physical position for a set of genomic intervals.
xyplot2 Plot copy number and physical position for a set of genomic intervals.
xyplot2-method Plot copy number and physical position for a set of genomic intervals.