%in%-method | Segment the genome into candidate regions |
chromosome | The ping class |
chromosome-method | The ping class |
chromosome-method | The ping class |
chromosome-method | The ping class |
code | Estimation of binding site positions |
code-method | Estimation of binding site positions |
coerce | Estimation of binding site positions |
coerce-method | Estimation of binding site positions |
delta | The ping class |
delta-method | The ping class |
delta-method | The ping class |
delta-method | The ping class |
density | Estimation of binding site positions |
density-method | Estimation of binding site positions |
density-method | The ping class |
K | Estimation of binding site positions |
K-method | Estimation of binding site positions |
length | The ping class |
length-method | Segment the genome into candidate regions |
length-method | The ping class |
makeRangedDataOutput | Create a RangedData object from a PING output |
map | Segment the genome into candidate regions |
map-method | Segment the genome into candidate regions |
maxRange | Estimation of binding site positions |
maxRange-method | Estimation of binding site positions |
minRange | Estimation of binding site positions |
minRange-method | Estimation of binding site positions |
mu | The ping class |
mu-method | The ping class |
mu-method | The ping class |
mu-method | The ping class |
newPing | The ping class |
newPing-method | The ping class |
newPingError | The ping class |
newPingError-method | The ping class |
newPingList | The ping class |
newPingList-method | The ping class |
paraEMH | Set convergence parameters of the EM algorithm |
paraEMTF | Set convergence parameters of the EM algorithm |
paraPriorH | Set convergence parameters of the EM algorithm |
paraPriorTF | Set convergence parameters of the EM algorithm |
PING | Estimation of binding site positions |
ping | Estimation of binding site positions |
ping-class | Estimation of binding site positions |
pingError | The ping class |
pingError-class | The ping class |
pingList | The ping class |
pingList-class | The ping class |
plot | Estimation of binding site positions |
plot-method | Estimation of binding site positions |
postPING | Post process Estimation of binding site positions obtained from PING |
score | Estimation of binding site positions |
score-method | The ping class |
score-method | The ping class |
score-method | The ping class |
scoreForward | Estimation of binding site positions |
scoreForward-method | Estimation of binding site positions |
scoreReverse | Estimation of binding site positions |
scoreReverse-method | Estimation of binding site positions |
se | The ping class |
se-method | The ping class |
se-method | The ping class |
se-method | The ping class |
seF | The ping class |
seF-method | The ping class |
seF-method | The ping class |
seF-method | The ping class |
segmentReads | Segment the genome into candidate regions |
segReads | Segment the genome into candidate regions |
segReads-class | Segment the genome into candidate regions |
segReadsList | Segment the genome into candidate regions |
segReadsList-class | Segment the genome into candidate regions |
seR | The ping class |
seR-method | The ping class |
seR-method | The ping class |
seR-method | The ping class |
setParaEM | Set convergence parameters of the EM algorithm |
setParaPrior | Set convergence parameters of the EM algorithm |
show | show PING |
show-method | show PING |
show-methods | show PING |
sigmaSqF | Estimation of binding site positions |
sigmaSqF-method | Estimation of binding site positions |
sigmaSqR | Estimation of binding site positions |
sigmaSqR-method | Estimation of binding site positions |
summary | summary PING |
summary-method | summary PING |
summary-methods | summary PING |
unique | GenomeData Unique Reads |
unique-method | GenomeData Unique Reads |
unique-methods | GenomeData Unique Reads |
w | The ping class |
w-method | The ping class |
w-method | The ping class |
w-method | The ping class |
[-method | Segment the genome into candidate regions |
[-method | The ping class |
[[-method | Segment the genome into candidate regions |
[[-method | The ping class |